Classes | |
| class | BasisSet |
| Basis set container class. More... | |
| class | StatCombData |
| class | GaussianNormalization |
| class | OI_OSRecursor |
| class | OverlapEngine |
| class | RotationOp |
| class | GaussianShell |
| Gaussian orbital shell. More... | |
| class | Chkpt |
| struct | thread_data |
| struct | dpdparams4 |
| struct | dpdfile4 |
| struct | dpdshift4 |
| struct | dpdbuf4 |
| struct | dpdtrans4 |
| struct | dpdparams2 |
| struct | dpdfile2 |
| struct | dpd_file4_cache_entry |
| struct | dpd_file2_cache_entry |
| struct | dpd_data |
| struct | dpd_gbl |
| struct | dpdpair |
| struct | iwlbuf |
| class | IWL |
| class | DipoleInt |
| Computes dipole integrals. More... | |
| class | ERI |
| Capable of computing two-electron repulsion integrals. More... | |
| class | MatrixFactory |
| A class for creating Matrix, SimpleMatrix, Vector, and SimpleVector objects. More... | |
| class | SphericalTransformComponent |
| class | SphericalTransform |
| class | SphericalTransformIter |
| class | IntegralsIterator |
| class | ShellCombinationsIterator |
| class | IntegralFactory |
| class | KineticInt |
| Computes kinetic integrals. More... | |
| class | Matrix |
| Makes using matrices just a little earlier. More... | |
| class | SimpleMatrix |
| Simple matrix class. Not symmetry blocked. More... | |
| class | Molecule |
| Molecule information class. More... | |
| class | OneBodyInt |
| Basis class for all one-electron integrals. More... | |
| class | ObaraSaikaTwoCenterRecursion |
| Generic Obara and Saika recursion object. More... | |
| class | ObaraSaikaTwoCenterMIRecursion |
| Obara and Saika recursion object for moment integrals. Currently not used by DipoleInt, hopefully soon. THIS CLASS HAS NOT BEEN TESTED!!! More... | |
| class | ObaraSaikaTwoCenterVIRecursion |
| Obara and Saika recursion object for potential integrals. More... | |
| class | ObaraSaikaTwoCenterVIDerivRecursion |
| Obara and Saika recursion object for computing potential derivatives. More... | |
| class | OverlapInt |
| This class computes overlap integrals and soon overlap integral derivatives. Use an IntegralFactory to create this object. More... | |
| class | PotentialInt |
| Computes potential integrals. Use an IntegralFactory to create this object. More... | |
| class | QuadrupoleInt |
| Computes quadrupole integrals. At last check this may not be working. Use an IntegralFactory to create this object. More... | |
| class | SOTransformComponent |
| class | SOTransformShell |
| class | SOTransformIter |
| class | SOTransform |
| class | SymmOp |
| class | TwoBodyInt |
| Two body integral base class. More... | |
| class | Vector |
| class | SimpleVector |
| class | Vector3 |
| class | Wavefunction |
| Simple wavefunction base class. More... | |
| class | ModelSpace |
| class | MOInfo |
| class | MOInfoBase |
| class | MOInfoSCF |
| class | OrbitalSpace |
| class | SlaterDeterminant |
| class | DataTypeException |
| class | IndexException |
| class | DuplicateKeyException |
| class | NotImplementedException |
| class | OptionsException |
| class | DataType |
| class | BooleanDataType |
| class | IntDataType |
| class | DoubleDataType |
| class | StringDataType |
| class | Data |
| class | ArrayType |
| class | MapType |
| class | Options |
| class | Communicator |
| class | MPICommunicator |
| class | LocalCommunicator |
| struct | psio_address |
| struct | psio_vol |
| struct | psio_entry |
| struct | psio_ud |
| class | PSIO |
| struct | String |
| struct | StringSet |
| struct | SlaterDet |
| struct | SlaterDetSet |
| struct | SlaterDetVector |
| struct | timer |
| class | Timer |
| struct | AllocationEntry |
| class | MemoryManager |
| class | StandardObjectPolicy |
| class | StandardArrayPolicy |
| class | SimpleReferenceCount |
| class | Ref |
| class | Calculation |
| class | Element_to_Z |
| class | PsiException |
| class | SanityCheckError |
| class | FeatureNotImplemented |
| class | LimitExceeded |
| class | StepSizeError |
| class | MaxIterationsExceeded |
| class | ConvergenceError |
| class | ResourceAllocationError |
| class | InputException |
| class | bad_masses_io |
| class | Fragment |
| class | Molecular_system |
| class | Module |
| struct | ModuleInformation |
Typedefs | |
| typedef short int | Label |
| typedef double | Value |
| typedef shared_ptr< Matrix > | SharedMatrix |
| typedef shared_ptr< SimpleMatrix > | SharedSimpleMatrix |
| typedef shared_ptr< Vector > | SharedVector |
| typedef shared_ptr< SimpleVector > | SharedSimpleVector |
| typedef unsigned long int | ULI |
| typedef struct psi::psio_entry | psio_tocentry |
| typedef std::vector< std::string > | strvec |
Enumerations | |
| enum | indices { pqrs, pqsr, prqs, prsq, psqr, psrq, qprs, qpsr, qrps, qrsp, qspr, qsrp, rqps, rqsp, rpqs, rpsq, rsqp, rspq, sqrp, sqpr, srqp, srpq, spqr, sprq } |
| enum | pattern { abc, acb, cab, cba, bca, bac } |
| enum | ReferenceType { AllRefs, UniqueRefs, ClosedShellRefs, UniqueOpenShellRefs } |
| enum | energy_type { SCF, CISD, CCSD, G3 } |
| enum | PsiReturnType { Success, Failure, Balk } |
Functions | |
| void | add_arr (double *a, double *b, double *c, int n) |
| void | add_mat (double **a, double **b, double **c, int n, int m) |
| double ** | block_matrix (unsigned long int n, unsigned long int m) |
| void | free_block (double **array) |
| double | dot_mat (double **a, double **b, int n) |
| void | dot_arr (double *a, double *b, int n, double *value) |
| void | eigout (double **a, double *b, double *c, int m, int n, FILE *out) |
| void | eigsort (double *d, double **v, int n) |
| void | mosort (double *d, double **v, int *sym, int nso, int nmo) |
| void | eivout (double **a, double *b, int m, int n, FILE *out) |
| void | ffile (FILE **fptr, char *suffix, int code) |
| void | ffile_noexit (FILE **fptr, char *suffix, int code) |
| void | ffileb (FILE **fptr, char *suffix, int code) |
| void | ffileb_noexit (FILE **fptr, char *suffix, int code) |
| void | ludcmp (double **, int, int *, double *) |
| void | lubksb (double **, int, int *, double *) |
| void | flin (double **a, double *b, int in, int im, double *det) |
| void | fndcor (long int *maxcrb, FILE *infile, FILE *outfile) |
| double * | init_array (unsigned long int size) |
| double ** | init_matrix (unsigned long int n, unsigned long int m) |
| void | free_matrix (double **array, unsigned long int size) |
| int * | init_int_array (int size) |
| void | zero_int_array (int *a, int size) |
| int ** | init_int_matrix (int rows, int cols) |
| void | free_int_matrix (int **array) |
| void | zero_int_matrix (int **array, int rows, int cols) |
| void | print_int_mat (int **a, int m, int n, FILE *out) |
| int | psi_start (FILE **infile, FILE **outfile, char **psi_file_prefix, int argc, char *argv[], int overwrite_output) |
| int | psi_stop (FILE *infile, FILE *outfile, char *psi_file_prefix) |
| char * | psi_ifname () |
| char * | psi_ofname () |
| char * | psi_fprefix () |
| void | balance (double **a, int n) |
| void | mat_to_arr (double **a, double *b, int m, int n) |
| void | arr_to_mat (double **a, double *b, int m, int n) |
| void | mmult (double **AF, int ta, double **BF, int tb, double **CF, int tc, int nr, int nl, int nc, int add) |
| void | mxmb (double **a, int ia, int ja, double **b, int ib, int jb, double **c, int ic, int jc, int nrow, int nlnk, int ncol) |
| void | print_array (double *a, int m, FILE *out) |
| void | print_mat (double **a, int rows, int cols, FILE *out) |
| void | rsp (int nm, int n, int nv, double *array, double *evals, int matz, double **evecs, double toler) |
| void | sq_rsp (int nm, int n, double **array, double *evals, int matz, double **evecs, double toler) |
| void | sq_to_tri (double **bmat, double *amat, int size) |
| void | tri_to_block (double *a, double **b, int num_ir, int *num_so, int *ioff) |
| void | block_to_tri (double *a, double **b, int num_ir, int *num_so, int *ioff) |
| void | tri_to_sq (double *amat, double **bmat, int size) |
| void | tstart () |
| void | tstop () |
| void | zero_arr (double *a, int size) |
| void | zero_mat (double **a, int rows, int cols) |
| long int * | init_long_int_array (int size) |
| void | zero_long_int_array (long int *a, int size) |
| long int ** | init_long_int_matrix (int rows, int cols) |
| void | free_long_int_matrix (long int **array) |
| void | zero_long_int_matrix (long int **array, int rows, int cols) |
| void | print_long_int_mat (long int **a, int m, int n, FILE *out) |
| void | tred2 (int n, double **a, double *d, double *e, int matz) |
| void | tqli (int n, double *d, double **z, double *e, int matz, double toler) |
| void | dpd_3d_sort (double ***Win, double ***Wout, int nirreps, int h, int *rowtot, int **rowidx, int ***roworb, int *asym, int *bsym, int *aoff, int *boff, int *cpi, int *coff, int **rowidx_out, enum pattern index, int sum) |
| int | dpd_4mat_irrep_print (double **matrix, dpdparams4 *Params, int block, int my_irrep, FILE *outfile) |
| double ** | dpd_block_matrix (int n, int m) |
| void | dpd_free_block (double **array, int n, int m) |
| int | dpd_buf4_axpbycz (dpdbuf4 *FileA, dpdbuf4 *FileB, dpdbuf4 *FileC, double a, double b, double c) |
| int | dpd_buf4_axpy (dpdbuf4 *BufX, dpdbuf4 *BufY, double alpha) |
| int | dpd_buf4_close (dpdbuf4 *Buf) |
| int | dpd_buf4_copy (dpdbuf4 *InBuf, int outfilenum, const char *label) |
| int | dpd_buf4_dirprd (dpdbuf4 *BufA, dpdbuf4 *BufB) |
| double | dpd_buf4_dot (dpdbuf4 *BufA, dpdbuf4 *BufB) |
| double | dpd_buf4_dot_self (dpdbuf4 *BufX) |
| int | dpd_buf4_dump (dpdbuf4 *DPDBuf, struct iwlbuf *IWLBuf, int *prel, int *qrel, int *rrel, int *srel, int bk_pack, int swap23) |
| int | dpd_buf4_init (dpdbuf4 *Buf, int inputfile, int irrep, int pqnum, int rsnum, int file_pqnum, int file_rsnum, int anti, const char *label) |
| int | dpd_buf4_mat_irrep_close (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_close_block (dpdbuf4 *Buf, int irrep, int num_pq) |
| int | dpd_buf4_mat_irrep_init (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_init_block (dpdbuf4 *Buf, int irrep, int num_pq) |
| int | dpd_buf4_mat_irrep_rd (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_rd_block (dpdbuf4 *Buf, int irrep, int start_pq, int num_pq) |
| int | dpd_buf4_mat_irrep_row_close (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_row_init (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_row_rd (dpdbuf4 *Buf, int irrep, int pq) |
| int | dpd_buf4_mat_irrep_row_wrt (dpdbuf4 *Buf, int irrep, int pq) |
| int | dpd_buf4_mat_irrep_row_zero (dpdbuf4 *Buf, int irrep, int row) |
| int | dpd_buf4_mat_irrep_shift13 (dpdbuf4 *Buf, int buf_block) |
| int | dpd_buf4_mat_irrep_shift31 (dpdbuf4 *Buf, int buf_block) |
| int | dpd_buf4_mat_irrep_wrt (dpdbuf4 *Buf, int irrep) |
| int | dpd_buf4_mat_irrep_wrt_block (dpdbuf4 *Buf, int irrep, int start_pq, int num_pq) |
| int | dpd_buf4_print (dpdbuf4 *Buf, FILE *outfile, int print_data) |
| int | dpd_buf4_scm (dpdbuf4 *InBuf, double alpha) |
| int | dpd_buf4_scmcopy (dpdbuf4 *InBuf, int outfilenum, const char *label, double alpha) |
| int | dpd_buf4_sort (dpdbuf4 *InBuf, int outfilenum, enum indices index, int pqnum, int rsnum, const char *label) |
| int | dpd_buf4_sort_axpy (dpdbuf4 *InBuf, int outfilenum, enum indices index, int pqnum, int rsnum, const char *label, double alpha) |
| int | dpd_buf4_sort_ooc (dpdbuf4 *InBuf, int outfilenum, enum indices index, int pqnum, int rsnum, const char *label) |
| int | dpd_buf4_symm (dpdbuf4 *Buf) |
| int | dpd_buf4_symm2 (dpdbuf4 *Buf1, dpdbuf4 *Buf2) |
| void | cc3_sigma_RHF (dpdbuf4 *CIjAb, dpdbuf4 *WAbEi, dpdbuf4 *WMbIj, int do_singles, dpdbuf4 *Dints, dpdfile2 *SIA, int do_doubles, dpdfile2 *FME, dpdbuf4 *WmAEf, dpdbuf4 *WMnIe, dpdbuf4 *SIjAb, int *occpi, int *occ_off, int *virtpi, int *vir_off, double omega, FILE *outfile, int newtrips) |
| void * | cc3_sigma_RHF_ic_thread (void *thread_data) |
| void | cc3_sigma_RHF_ic (dpdbuf4 *CIjAb, dpdbuf4 *WAbEi, dpdbuf4 *WMbIj, int do_singles, dpdbuf4 *Dints, dpdfile2 *SIA, int do_doubles, dpdfile2 *FME, dpdbuf4 *WmAEf, dpdbuf4 *WMnIe, dpdbuf4 *SIjAb, int *occpi, int *occ_off, int *virtpi, int *vir_off, double omega, FILE *outfile, int nthreads, int newtrips) |
| void | cc3_sigma_UHF_AAA (dpdbuf4 *CMNEF, dpdbuf4 *WABEI, dpdbuf4 *WMBIJ, int do_singles, dpdbuf4 *Dints_anti, dpdfile2 *SIA, int do_doubles, dpdfile2 *FME, dpdbuf4 *WMAFE, dpdbuf4 *WMNIE, dpdbuf4 *SIJAB, int *aoccpi, int *aocc_off, int *avirtpi, int *avir_off, double omega, FILE *outfile) |
| void | cc3_sigma_UHF_BBB (dpdbuf4 *Cmnef, dpdbuf4 *Wabei, dpdbuf4 *Wmbij, int do_singles, dpdbuf4 *Dijab_anti, dpdfile2 *Sia, int do_doubles, dpdfile2 *Fme, dpdbuf4 *Wmafe, dpdbuf4 *Wmnie, dpdbuf4 *Sijab, int *boccpi, int *bocc_off, int *bvirtpi, int *bvir_off, double omega, FILE *outfile) |
| void | cc3_sigma_UHF_AAB (dpdbuf4 *C2AA, dpdbuf4 *C2AB, dpdbuf4 *C2BA, dpdbuf4 *FAA, dpdbuf4 *FAB, dpdbuf4 *FBA, dpdbuf4 *EAA, dpdbuf4 *EAB, dpdbuf4 *EBA, int do_singles, dpdbuf4 *DAA, dpdbuf4 *DAB, dpdfile2 *SIA, dpdfile2 *Sia, int do_doubles, dpdfile2 *FME, dpdfile2 *Fme, dpdbuf4 *WMAFE, dpdbuf4 *WMaFe, dpdbuf4 *WmAfE, dpdbuf4 *WMNIE, dpdbuf4 *WMnIe, dpdbuf4 *WmNiE, dpdbuf4 *SIJAB, dpdbuf4 *SIjAb, int *aoccpi, int *aocc_off, int *boccpi, int *bocc_off, int *avirtpi, int *avir_off, int *bvirtpi, int *bvir_off, double omega, FILE *outfile) |
| void | cc3_sigma_UHF_BBA (dpdbuf4 *C2BB, dpdbuf4 *C2AB, dpdbuf4 *C2BA, dpdbuf4 *FBB, dpdbuf4 *FAB, dpdbuf4 *FBA, dpdbuf4 *EBB, dpdbuf4 *EAB, dpdbuf4 *EBA, int do_singles, dpdbuf4 *DBB, dpdbuf4 *DBA, dpdfile2 *SIA, dpdfile2 *Sia, int do_doubles, dpdfile2 *FME, dpdfile2 *Fme, dpdbuf4 *Wmafe, dpdbuf4 *WMaFe, dpdbuf4 *WmAfE, dpdbuf4 *Wmnie, dpdbuf4 *WMnIe, dpdbuf4 *WmNiE, dpdbuf4 *Sijab, dpdbuf4 *SIjAb, int *aoccpi, int *aocc_off, int *boccpi, int *bocc_off, int *avirtpi, int *avir_off, int *bvirtpi, int *bvir_off, double omega, FILE *outfile) |
| int | dpd_close (int dpd_num) |
| int | dpd_contract222 (dpdfile2 *X, dpdfile2 *Y, dpdfile2 *Z, int target_X, int target_Y, double alpha, double beta) |
| int | dpd_contract244 (dpdfile2 *X, dpdbuf4 *Y, dpdbuf4 *Z, int sum_X, int sum_Y, int Ztrans, double alpha, double beta) |
| int | dpd_contract422 (dpdbuf4 *X, dpdfile2 *Y, dpdfile2 *Z, int trans_Y, int trans_Z, double alpha, double beta) |
| int | dpd_contract424 (dpdbuf4 *X, dpdfile2 *Y, dpdbuf4 *Z, int sum_X, int sum_Y, int Ztrans, double alpha, double beta) |
| int | dpd_contract442 (dpdbuf4 *X, dpdbuf4 *Y, dpdfile2 *Z, int target_X, int target_Y, double alpha, double beta) |
| int | dpd_contract444 (dpdbuf4 *X, dpdbuf4 *Y, dpdbuf4 *Z, int target_X, int target_Y, double alpha, double beta) |
| int | dpd_dot13 (dpdfile2 *T, dpdbuf4 *I, dpdfile2 *Z, int transt, int transz, double alpha, double beta) |
| int | dpd_dot14 (dpdfile2 *T, dpdbuf4 *I, dpdfile2 *Z, int transt, int transz, double alpha, double beta) |
| int | dpd_dot23 (dpdfile2 *T, dpdbuf4 *I, dpdfile2 *Z, int transt, int transz, double alpha, double beta) |
| int | dpd_dot24 (dpdfile2 *T, dpdbuf4 *I, dpdfile2 *Z, int transt, int transz, double alpha, double beta) |
| int | dpd_init (int dpd_num, int nirreps, long int memory, int cachetype, int *cachefiles, int **cachelist, struct dpd_file4_cache_entry *priority, int num_subspaces,...) |
| int | dpd_init (int dpd_num, int nirreps, long int memory, int cachetype, int *cachefiles, int **cachelist, struct dpd_file4_cache_entry *priority, int num_subspaces, std::vector< int * > &spaceArrays) |
| int | dpd_set_default (int dpd_num) |
| void | dpd_error (const char *caller, FILE *outfile) |
| long int | dpd_memfree (void) |
| void | dpd_memset (long int) |
| int | dpd_trace42_13 (dpdbuf4 *A, dpdfile2 *B, int transb, double alpha, double beta) |
| int | dpd_file2_init (dpdfile2 *File, int filenum, int irrep, int pnum, int qnum, const char *label) |
| int | dpd_file2_close (dpdfile2 *File) |
| int | dpd_file2_mat_init (dpdfile2 *File) |
| int | dpd_file2_mat_close (dpdfile2 *File) |
| int | dpd_file2_mat_rd (dpdfile2 *File) |
| int | dpd_file2_mat_wrt (dpdfile2 *File) |
| int | dpd_file2_print (dpdfile2 *File, FILE *outfile) |
| int | dpd_file2_mat_print (dpdfile2 *File, FILE *outfile) |
| int | dpd_file2_copy (dpdfile2 *InFile, int outfilenum, const char *label) |
| int | dpd_file2_dirprd (dpdfile2 *FileA, dpdfile2 *FileB) |
| double | dpd_file2_dot (dpdfile2 *FileA, dpdfile2 *FileB) |
| int | dpd_file2_scm (dpdfile2 *InFile, double alpha) |
| double | dpd_file2_dot_self (dpdfile2 *BufX) |
| double | dpd_file2_trace (dpdfile2 *InFile) |
| int | dpd_file2_axpy (dpdfile2 *FileA, dpdfile2 *FileB, double alpha, int transA) |
| int | dpd_file2_axpbycz (dpdfile2 *FileA, dpdfile2 *FileB, dpdfile2 *FileC, double a, double b, double c) |
| int | dpd_file4_init (dpdfile4 *File, int filenum, int irrep, int pqnum, int rsnum, const char *label) |
| int | dpd_file4_init_nocache (dpdfile4 *File, int filenum, int irrep, int pqnum, int rsnum, const char *label) |
| int | dpd_file4_close (dpdfile4 *File) |
| int | dpd_file4_mat_irrep_init (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_close (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_rd (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_wrt (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_row_init (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_row_close (dpdfile4 *File, int irrep) |
| int | dpd_file4_mat_irrep_row_rd (dpdfile4 *File, int irrep, int row) |
| int | dpd_file4_mat_irrep_row_wrt (dpdfile4 *File, int irrep, int row) |
| int | dpd_file4_mat_irrep_row_zero (dpdfile4 *File, int irrep, int row) |
| int | dpd_file4_print (dpdfile4 *File, FILE *outfile) |
| int | dpd_file4_mat_irrep_rd_block (dpdfile4 *File, int irrep, int start_pq, int num_pq) |
| int | dpd_file4_mat_irrep_wrt_block (dpdfile4 *File, int irrep, int start_pq, int num_pq) |
| int | dpd_trans4_init (dpdtrans4 *Trans, dpdbuf4 *Buf) |
| int | dpd_trans4_close (dpdtrans4 *Trans) |
| int | dpd_trans4_mat_irrep_init (dpdtrans4 *Trans, int irrep) |
| int | dpd_trans4_mat_irrep_close (dpdtrans4 *Trans, int irrep) |
| int | dpd_trans4_mat_irrep_rd (dpdtrans4 *Trans, int irrep) |
| int | dpd_trans4_mat_irrep_wrt (dpdtrans4 *Trans, int irrep) |
| int | dpd_trans4_mat_irrep_shift13 (dpdtrans4 *Trans, int irrep) |
| int | dpd_trans4_mat_irrep_shift31 (dpdtrans4 *Trans, int irrep) |
| void | dpd_file2_cache_init (void) |
| void | dpd_file2_cache_close (void) |
| void | dpd_file2_cache_print (FILE *outfile) |
| struct dpd_file2_cache_entry * | dpd_file2_cache_scan (int filenum, int irrep, int pnum, int qnum, const char *label, int dpdnum) |
| struct dpd_file2_cache_entry * | dpd_file2_cache_last (void) |
| int | dpd_file2_cache_add (dpdfile2 *File) |
| int | dpd_file2_cache_del (dpdfile2 *File) |
| int | dpd_file4_cache_del_low (void) |
| void | dpd_file2_cache_dirty (dpdfile2 *File) |
| void | dpd_file4_cache_init (void) |
| void | dpd_file4_cache_close (void) |
| void | dpd_file4_cache_print (FILE *outfile) |
| void | dpd_file4_cache_print_screen (void) |
| int | dpd_file4_cache_get_priority (dpdfile4 *File) |
| struct dpd_file4_cache_entry * | dpd_file4_cache_scan (int filenum, int irrep, int pqnum, int rsnum, const char *label, int dpdnum) |
| struct dpd_file4_cache_entry * | dpd_file4_cache_last (void) |
| int | dpd_file4_cache_add (dpdfile4 *File, unsigned int priority) |
| int | dpd_file4_cache_del (dpdfile4 *File) |
| struct dpd_file4_cache_entry * | dpd_file4_cache_find_lru (void) |
| int | dpd_file4_cache_del_lru (void) |
| void | dpd_file4_cache_dirty (dpdfile4 *File) |
| void | dpd_file4_cache_lock (dpdfile4 *File) |
| void | dpd_file4_cache_unlock (dpdfile4 *File) |
| void | T3_AAA (double ***W1, int nirreps, int I, int Gi, int J, int Gj, int K, int Gk, dpdbuf4 *T2, dpdbuf4 *F, dpdbuf4 *E, dpdfile2 *fIJ, dpdfile2 *fAB, int *occpi, int *occ_off, int *virtpi, int *vir_off, double omega) |
| void | T3_AAB (double ***W1, int nirreps, int I, int Gi, int J, int Gj, int K, int Gk, dpdbuf4 *T2AA, dpdbuf4 *T2AB, dpdbuf4 *T2BA, dpdbuf4 *FAA, dpdbuf4 *FAB, dpdbuf4 *FBA, dpdbuf4 *EAA, dpdbuf4 *EAB, dpdbuf4 *EBA, dpdfile2 *fIJ, dpdfile2 *fij, dpdfile2 *fAB, dpdfile2 *fab, int *aoccpi, int *aocc_off, int *boccpi, int *bocc_off, int *avirtpi, int *avir_off, int *bvirtpi, int *bvir_off, double omega) |
| void | T3_RHF (double ***W1, int nirreps, int I, int Gi, int J, int Gj, int K, int Gk, dpdbuf4 *T2, dpdbuf4 *F, dpdbuf4 *E, dpdfile2 *fIJ, dpdfile2 *fAB, int *occpi, int *occ_off, int *virtpi, int *vir_off, double omega) |
| void | T3_RHF_ic (double ***W1, int nirreps, int I, int Gi, int J, int Gj, int K, int Gk, dpdbuf4 *T2, dpdbuf4 *F, dpdbuf4 *E, dpdfile2 *fIJ, dpdfile2 *fAB, int *occpi, int *occ_off, int *virtpi, int *vir_off, double omega) |
| struct dpd_file4_cache_entry * | dpd_file4_cache_find_low (void) |
| void | iwl_buf_close (struct iwlbuf *Buf, int k) |
| void | iwl_buf_fetch (struct iwlbuf *Buf) |
| void | iwl_buf_flush (struct iwlbuf *Buf, int lastbuf) |
| void | iwl_buf_init (struct iwlbuf *Buf, int itape, double cutoff, int oldfile, int readflag) |
| void | iwl_buf_put (struct iwlbuf *Buf) |
| int | iwl_buf_rd (struct iwlbuf *Buf, int target_pq, double *ints, int *ioff_lt, int *ioff_rt, int mp2, int printflg, FILE *out) |
| int | iwl_buf_rd_all (struct iwlbuf *Buf, double *ints, int *ioff_lt, int *ioff_rt, int no_pq_perm, int *ioff, int printflg, FILE *out) |
| int | iwl_buf_rd_all2 (struct iwlbuf *Buf, double **ints, int *ioff_lt, int *ioff_rt, int no_pq_perm, int *, int printflg, FILE *out) |
| int | iwl_buf_rd_all_act (struct iwlbuf *Buf, double *ints, int *ioff_lt, int *ioff_rt, int no_pq_perm, int *ioff, int fstact, int lstact, int printflg, FILE *out) |
| int | iwl_buf_rd_all_mp2r12a (struct iwlbuf *Buf, double *ints, int *ioff_lt, int *ioff_rt, int bra_ket_symm, int *, int printflg, FILE *out) |
| int | iwl_buf_rd_arr (struct iwlbuf *Buf, int target_pq, double *ints, int *rlist, int *slist, int *size, int *ioff, int printflg, FILE *out) |
| int | iwl_buf_rd_arr2 (struct iwlbuf *Buf, double *ints, int *plist, int *qlist, int *rlist, int *slist, int *size, int *ioff, int printflg, FILE *out) |
| void | iwl_buf_toend (struct iwlbuf *Buf) |
| void | iwl_buf_wrt (struct iwlbuf *Buf, int p, int q, int pq, int pqsym, double *arr, int rmax, int *ioff, int *orbsym, int *firsti, int *lasti, int printflag, FILE *out) |
| void | iwl_buf_wrt_all (struct iwlbuf *Buf, int nbfso, double *ints, int *ioff, int printflg, FILE *out) |
| void | iwl_buf_wrt_arr (struct iwlbuf *Buf, double *arr, int *p, int *q, int *r, int *s, long int size) |
| void | iwl_buf_wrt_arr2 (struct iwlbuf *Buf, double *arr, int p, int q, int *rlist, int *slist, int size, int printflag, FILE *out) |
| void | iwl_buf_wrt_arr_SI (struct iwlbuf *Buf, double *arr, short int *p, short int *q, short int *r, short int *s, int size) |
| void | iwl_buf_wrt_arr_SI_nocut (struct iwlbuf *Buf, double *arr, short int *p, short int *q, short int *r, short int *s, int size) |
| void | iwl_buf_wrt_mat (struct iwlbuf *Buf, int ptr, int qtr, double **mat, int rfirst, int rlast, int sfirst, int slast, int *reorder, int reorder_offset, int printflag, int *ioff, FILE *out) |
| void | iwl_buf_wrt_mat2 (struct iwlbuf *Buf, int ptr, int qtr, double **mat, int rfirst, int rlast, int sfirst, int slast, int *reorder, int reorder_offset, int printflag, int *ioff, FILE *out) |
| void | iwl_buf_wrt_mp2 (struct iwlbuf *Buf, int p, int q, int pq, int pqsym, double **arr, int rsym, int *firstr, int *lastr, int *firsts, int *lasts, int *occ, int *vir, int *ioff, int printflag, FILE *out) |
| void | iwl_buf_wrt_mp2r12a (struct iwlbuf *Buf, int p, int q, int pq, int pqsym, double **arr, int rsym, int *firstr, int *lastr, int *firsts, int *lasts, int *occ, int bra_ket_symm, int *ioff, int printflag, FILE *out) |
| void | iwl_buf_wrt_val (struct iwlbuf *Buf, int p, int q, int r, int s, double value, int printflag, FILE *out, int dirac) |
| void | iwl_buf_wrt_val_SI (struct iwlbuf *Buf, short int p, short int q, short int r, short int s, double value, int printflag, FILE *out, int dirac) |
| int | iwl_rdone (int itap, const char *label, double *ints, int ntri, int erase, int printflg, FILE *outfile) |
| void | iwl_wrtone (int itap, const char *label, int ntri, double *onel_ints) |
| void | iwl_rdtwo (int itap, double *ints, int *ioff, int norbs, int nfzc, int nfzv, int printflg, FILE *outfile) |
| void | iwl_wrttwo (int itap, int nbfso, double *ints, int *ioff, double toler, int printflg, FILE *outfile) |
| void | sortbuf (struct iwlbuf *inbuf, struct iwlbuf *outbuf, double *ints, int fpq, int lpq, int *ioff, int *ioff2, int nbfso, int elbert, int intermediate, int no_pq_perm, int qdim, int add, int printflg, FILE *outfile) |
| Vector3 | operator* (double, const Vector3 &) |
| int | psio_close (unsigned int unit, int keep) |
| int | psio_done (void) |
| void | psio_error (unsigned int unit, unsigned int errval) |
| std::string | fullkwd (const char *kwdgrp, const char *kwd, int unit) |
| int | psio_set_filescfg_kwd (const char *kwdgrp, const char *kwd, int unit, const char *kwdval) |
| const char * | psio_get_filescfg_kwd (const char *kwdgrp, const char *kwd, int unit) |
| psio_address | psio_get_address (psio_address start, ULI shift) |
| int | psio_get_filename_default (char **name) |
| psio_address | psio_get_global_address (psio_address entry_start, psio_address rel_address) |
| ULI | psio_get_length (psio_address sadd, psio_address eadd) |
| unsigned int | psio_get_numvols_default (void) |
| int | psio_get_volpath_default (unsigned int volume, char **path) |
| int | psio_init (void) |
| int | psio_state () |
| int | psiopp_ipv1_config (PSIO *psio_obj) |
| int | psiopp_ipv1_config (shared_ptr< PSIO > psio_obj) |
| int | psio_ipv1_config () |
| int | psio_open (unsigned int unit, int status) |
| int | psio_open_check (unsigned int unit) |
| int | psio_volseek (psio_vol *vol, ULI page, ULI offset, ULI numvols) |
| psio_address | psio_get_entry_end (unsigned int unit, const char *key) |
| int | psio_tocwrite (unsigned int unit) |
| int | psio_tocread (unsigned int unit) |
| void | psio_tocprint (unsigned int unit, FILE *output) |
| psio_tocentry * | psio_tocscan (unsigned int unit, const char *key) |
| psio_tocentry * | psio_toclast (unsigned int unit) |
| unsigned int | psio_toclen (unsigned int unit) |
| int | psio_tocclean (unsigned int unit, const char *key) |
| int | psio_write (unsigned int unit, const char *key, char *buffer, ULI size, psio_address sadd, psio_address *eadd) |
| int | psio_read (unsigned int unit, const char *key, char *buffer, ULI size, psio_address sadd, psio_address *eadd) |
| int | psio_write_entry (unsigned int unit, const char *key, char *buffer, ULI size) |
| int | psio_read_entry (unsigned int unit, const char *key, char *buffer, ULI size) |
| int | psio_write_block (unsigned int unit, const char *key, char *buffer, ULI blksiz, ULI start_blk, ULI end_blk) |
| int | psio_read_block (unsigned int unit, const char *key, char *buffer, ULI blksiz, ULI start_blk, ULI end_blk) |
| int | psio_rw (unsigned int unit, char *buffer, psio_address address, ULI size, int wrt) |
| ULI | psio_rd_toclen (unsigned int unit) |
| void | psio_wt_toclen (unsigned int unit, ULI toclen) |
| double *** | init_3d_array (int p, int q, int r) |
| void | free_3d_array (double ***A, int p, int q) |
| void | C_DAXPY (int length, double a, double *x, int inc_x, double *y, int inc_y) |
| void | C_DCOPY (int length, double *x, int inc_x, double *y, int inc_y) |
| void | C_DSCAL (int length, double alpha, double *vec, int inc) |
| void | C_DROT (int length, double *x, int inc_x, double *y, int inc_y, double costheta, double sintheta) |
| void | C_DGEMM (char transa, char transb, int m, int n, int k, double alpha, double *A, int nca, double *B, int ncb, double beta, double *C, int ncc) |
| void | C_DGEMV (char transa, int m, int n, double alpha, double *A, int nca, double *X, int inc_x, double beta, double *Y, int inc_y) |
| void | C_DSPMV (char uplo, int n, double alpha, double *A, double *X, int inc_x, double beta, double *Y, int inc_y) |
| double | C_DDOT (int n, double *x, int inc_x, double *y, int inc_y) |
| int | cc_excited (char *wfn) |
| int | cc_excited (std::string wfn) |
| int | cc_wfn (char *wfn) |
| int | cc_wfn (std::string wfn) |
| int | ci_wfn (char *wfn) |
| int | ci_wfn (std::string wfn) |
| int | david (double **A, int N, int M, double *eps, double **v, double cutoff, int print) |
| void | dirprd_block (double **A, double **B, int rows, int cols) |
| double | dot_block (double **A, double **B, int rows, int cols, double alpha) |
| double | eri (unsigned int l1, unsigned int m1, unsigned int n1, double alpha1, double A[3], unsigned int l2, unsigned int m2, unsigned int n2, double alpha2, double B[3], unsigned int l3, unsigned int m3, unsigned int n3, double alpha3, double C[3], unsigned int l4, unsigned int m4, unsigned int n4, double alpha4, double D[3], int norm_flag) |
| double | norm_const (unsigned int l1, unsigned int m1, unsigned int n1, double alpha1, double A[3]) |
| void | fill_sym_matrix (double **A, int size) |
| void | filter (double *input, double *output, int *ioff, int norbs, int nfzc, int nfzv) |
| int * | get_frzcpi () |
| int * | get_frzvpi () |
| double | invert_matrix (double **a, double **y, int N, FILE *outfile) |
| int | C_DGEEV (int n, double **a, int lda, double *wr, double *wi, double **vl, int ldvl, double **vr, int ldvr, double *work, int lwork, int info) |
| int | C_DGESV (int n, int nrhs, double *a, int lda, int *ipiv, double *b, int ldb) |
| int | C_DGETRF (int nrow, int ncol, double *a, int lda, int *ipiv) |
| int | C_DGETRI (int n, double *a, int lda, int *ipiv, double *work, int lwork) |
| int | C_DGESVD (char jobu, char jobvt, int m, int n, double *A, int lda, double *s, double *u, int ldu, double *vt, int ldvt, double *work, int lwork) |
| int | C_DSYEV (char jobz, char uplo, int n, double *A, int lda, double *w, double *work, int lwork) |
| int | mat_in (FILE *fp, double **array, int width, int max_length, int *stat) |
| int | mat_print (double **matrix, int rows, int cols, FILE *outfile) |
| void | newmm_rking (double **A, int transa, double **B, int transb, double **C, int num_rows, int num_links, int num_cols, double alpha, double beta) |
| void | normalize (double **A, int rows, int cols) |
| double | dot_prod (double *v1, double *v2) |
| void | cross_prod (double *v1, double *v2, double *out) |
| void | unit_vec (double *B, double *A, double *AB) |
| void | orient_fragment (int natom_A, int natom_B, int P_A, int P_B, double **geom_A, double **geom_B, double **ref_coeff_A, double **ref_coeff_B, double R_AB, double theta_A, double theta_B, double tau, double phi_A, double phi_B, FILE *outfile) |
| int | pople (double **A, double *x, int dimen, int num_vecs, double tolerance, FILE *outfile, int print_lvl) |
| double | combinations (int n, int k) |
| double | factorial (int n) |
| void | schmidt (double **A, int rows, int cols, FILE *outfile) |
| int | schmidt_add (double **A, int rows, int cols, double *v) |
| void | solve_2x2_pep (double **H, double S, double *evals, double **evecs) |
| void | reorder_qt (int *docc_in, int *socc_in, int *frozen_docc_in, int *frozen_uocc_in, int *order, int *orbs_per_irrep, int nirreps) |
| void | reorder_qt_uhf (int *docc, int *socc, int *frozen_docc, int *frozen_uocc, int *order_alpha, int *order_beta, int *orbspi, int nirreps) |
| void | reorder_ras (int *docc_in, int *socc_in, int *frozen_docc_in, int *frozen_uocc_in, int *order, int *orbs_per_irrep, int *ras1, int *ras2, int *ras3, int *ras4, int do_ras4, int nirreps) |
| void | reorder_ras2 (int *docc_in, int *socc_in, int *frozen_docc_in, int *frozen_uocc_in, int *order, int *orbs_per_irrep, int *ras1, int *ras2, int *ras3, int *ras4, int parsed_ras1, int parsed_ras2, int do_ras4, int nirreps) |
| int | ras_set (int nirreps, int nbfso, int freeze_core, int *orbspi, int *docc, int *socc, int *frdocc, int *fruocc, int **ras_opi, int *order, int ras_type) |
| int | ras_set2 (int nirreps, int nbfso, int delete_fzdocc, int delete_restrdocc, int *orbspi, int *docc, int *socc, int *frdocc, int *fruocc, int *restrdocc, int *restruocc, int **ras_opi, int *order, int ras_type, int hoffmann) |
| void | timer_init (void) |
| void | timer_done (void) |
| void | timer_on (const char *key) |
| void | timer_off (const char *key) |
| void | print_block (double *, int, int, FILE *) |
| void | sort (double *A, double **B, int n) |
| void | sort_vector (double *A, int n) |
| void | zmat_point (double *A, double *B, double *C, double R_CD, double theta_BCD, double phi_ABCD, double *D) |
| void | rotate_vecs (double *axis, double phi, double **vectors, int num_vectors) |
| char * | strncpy (char *dest, const char *source, size_t n) |
| Same as strncpy(), but make sure that dest ends in . | |
| double | bisect (double(*function)(double), double low, double high, double tolerance, int maxiter, int printflag) |
| double | newton (double(*F)(double), double(*dF)(double), double x, double tolerance, int maxiter, int printflag) |
| double | secant (double(*F)(double), double x0, double x1, double tolerance, int maxiter, int printflag) |
| void | stringset_init (StringSet *sset, int size, int nelec, int nfzc, short int *frozen_occ) |
| void | stringset_delete (StringSet *sset) |
| void | stringset_add (StringSet *sset, int index, unsigned char *Occ) |
| void | stringset_reindex (StringSet *sset, short int *mo_map) |
| void | stringset_write (ULI unit, char *prefix, StringSet *sset) |
| void | stringset_read (ULI unit, char *prefix, StringSet **stringset) |
| void | slaterdetset_init (SlaterDetSet *sdset, int size, StringSet *alphastrings, StringSet *betastrings) |
| void | slaterdetset_delete (SlaterDetSet *sdset) |
| void | slaterdetset_delete_full (SlaterDetSet *sdset) |
| void | slaterdetset_add (SlaterDetSet *sdset, int index, int alphastring, int betastring) |
| void | slaterdetset_write (ULI unit, char *prefix, SlaterDetSet *sdset) |
| void | slaterdetset_read (ULI unit, char *prefix, SlaterDetSet **slaterdetset) |
| void | slaterdetvector_init (SlaterDetVector *sdvector, SlaterDetSet *sdset) |
| void | slaterdetvector_delete (SlaterDetVector *sdvector) |
| void | slaterdetvector_delete_full (SlaterDetVector *sdvector) |
| void | slaterdetvector_add (SlaterDetVector *sdvector, int index, double coeff) |
| void | slaterdetvector_set (SlaterDetVector *sdvector, double *coeffs) |
| void | slaterdetvector_write (ULI unit, char *prefix, SlaterDetVector *vector) |
| void | slaterdetset_write_vect (ULI unit, char *prefix, double *coeffs, int size, int vectnum) |
| void | slaterdetvector_read (ULI unit, char *prefix, SlaterDetVector **sdvector) |
| void | slaterdetset_read_vect (ULI unit, char *prefix, double *coeffs, int size, int vectnum) |
| struct timer * | timer_scan (const char *key) |
| struct timer * | timer_last (void) |
| void | generate_combinations (int n, int k, std::vector< std::vector< int > > &combinations) |
| std::string | file_to_string (std::string const &name) |
| bool | space (char c) |
| bool | not_space (char c) |
| std::vector< std::string > | split (const std::string &str) |
| std::vector< std::string > | split_indices (const std::string &str) |
| void | to_lower (std::string &str) |
| void | to_upper (std::string &str) |
| std::string | to_string (const int val) |
| std::string | to_string (const double val) |
| double | to_double (const std::string str) |
| double | ToDouble (const std::string inString) |
| int | string_to_integer (const std::string inString) |
| void | append_reference (std::string &str, int reference) |
| std::string | add_reference (std::string &str, int reference) |
| std::string | find_and_replace (std::string &source, const std::string &target, const std::string &replace) |
| void | trim_spaces (std::string &str) |
| double | bytes_to_MiB (size_t n) |
| template<typename T> | |
| double | type_to_MiB (size_t n) |
| bool | opening_square_bracket (char c) |
| bool | closing_square_bracket (char c) |
| double | to_MB (size_t n) |
| unsigned long int | init_smatrix (short **&matrix, int size1, int size2) |
| unsigned long int | free_smatrix (short **&matrix, int size1, int size2) |
| unsigned long int | init_smatrix (short ***&matrix, int size1, int size2, int size3) |
| unsigned long int | free_smatrix (short ***matrix, int size1, int size2, int size3) |
| void | punt (const char *mess) |
| Handles unexpected termination. | |
| double ** | symm_matrix_invert (double **_A, int dim, int print_det, int redundant) |
| Inverts a symmetric matrix. | |
| void | psiclean (void) |
| void | register_modules () |
| void | enable_modules () |
| int | read_options (std::string name, Options &options) |
| void | launch_module (std::string modname, Options &options, int argc, char *argv[], std::map< std::string, PsiReturnType(*)(Options &, int argc, char *argv[])> &dispatch_table) |
| void | execute_sequence (std::string sequence[], Options &options, int argc, char *argv[], std::map< std::string, PsiReturnType(*)(Options &, int argc, char *argv[])> &dispatch_table) |
| int | psi3_simulator (Options &options, int argc, char *argv[]) |
| int | psi_start (int argc, char *argv[]) |
| void | print_version (FILE *) |
| void | set_memory (FILE *infile, FILE *outfile) |
| int | psi4_driver (Options &options, int argc, char *argv[]) |
| int | read_options (const std::string &name, Options &options) |
| void | read_atom_basis (char **&atom_basis, int num_atoms) |
| bool | initialize_ruby () |
| void | load_input_file_into_ruby () |
| void | process_input_file () |
| void | finalize_ruby () |
| int | run_interactive_ruby () |
| bool | create_global_task () |
| void | setup_driver (Options &options) |
| void | print_usage () |
Variables | |
| Chkpt * | _default_chkpt_lib_ = 0 |
| time_t | time_start |
| time_t | time_end |
| FILE * | outfile |
| FILE * | infile |
| ModelSpace * | model_space |
| MOInfo * | moinfo |
| MOInfoSCF * | moinfo_scf |
| psio_address | PSIO_ZERO = { 0, 0 } |
| PSIO * | _default_psio_lib_ = 0 |
| struct timer * | global_timer |
| time_t | timer_start |
| time_t | timer_end |
| MemoryManager * | _memory_manager_ |
| int | myid |
| int | nprocs |
| Chkpt * | chkpt |
| ModuleInformation | modules_ [] |
| PSIO * | psio = NULL |
|
std::map< std::string, PsiReturnType(*)(Options &, int argc, char *argv[])> | dispatch_table |
| EXT char ** | atom_basis |
| EXT std::string | g_szInputFile |
| EXT std::string | g_szOutputFilename |
| EXT bool | g_bVerbose |
| EXT bool | check_only |
| EXT bool | clean_only |
| int | g_iPutsIndent |
| bool | g_bQuietRuby |
| bool | g_bIRB |
| void * | g_rbExecNode |
| Module | module |
| char * | psi_file_prefix |
| const std::string | Z_to_element [] |
rotate_vecs(): Rotate a set of vectors around an arbitrary axis
| w | double * : axis to rotate around (wx, wy, wz) - gets normalized here | |
| phi | double : magnitude of rotation | |
| v | double ** : points to rotate - column dim is 3; overwritten on exit | |
| num_v | int : |
Rollin King, Feb. 2008
AEL() computes the approximate excitation level according to Stanton and Bartlett, JCP, 98, 1993, 7034. Trace [rho(excited) - rho(ground)] = AEL where both densities are expressed in the basis that diagonalizes the ground-state CCSD density. I was never able to get these results to agree with those of JFS or the current ACES2 so I'm not going to use this right now. --RAK
| int psi::dpd_file4_init_nocache | ( | dpdfile4 * | File, | |
| int | filenum, | |||
| int | irrep, | |||
| int | pqnum, | |||
| int | rsnum, | |||
| const char * | label | |||
| ) |
This file4_init() does not add the file4 to the cache
| void psi::generate_combinations | ( | int | n, | |
| int | k, | |||
| std::vector< std::vector< int > > & | combinations | |||
| ) |
Generate combinations of 0,1,...,(n-1) taken k at a time
| n | ||
| k | ||
| combinations | a vector<vector<int> > that will store all the combinations |
| int psi::iwl_buf_rd_arr2 | ( | struct iwlbuf * | Buf, | |
| double * | ints, | |||
| int * | plist, | |||
| int * | qlist, | |||
| int * | rlist, | |||
| int * | slist, | |||
| int * | size, | |||
| int * | ioff, | |||
| int | printflg, | |||
| FILE * | out | |||
| ) |
Read from an Integrals With Labels formatted PSI buffer. The buffer must have been initialized with iwl_buf_init(). The integrals and their labels are returned in the arrays ints, plist, qlist, rlist, and slist, and the size of these arrays is returned in 'size.'
Returns: 0 if end of file, otherwise 1
Revised 6/27/96 by CDS for new format
| void psi::print_usage | ( | void | ) |
Print command-line usage information.
| void psi::print_version | ( | FILE * | myout | ) |
Print PSI version information that was set in configure.ac
| void psi::psiclean | ( | void | ) |
Remove all psio files. This should serve as a more elegant replacement for the PSI3 utility psiclean, which executed system calls to delete the files.
| int psi::psiopp_ipv1_config | ( | PSIO * | psio_obj | ) |
This function initializes the libpsio library using the .psirc file + input file
| int psi::run_interactive_ruby | ( | ) |
Handles running Ruby interactively. This version makes use of the irb module found in Ruby to handle Ruby input parsing.
| char * psi::strncpy | ( | char * | dest, | |
| const char * | source, | |||
| size_t | n | |||
| ) |
| psi::symm_matrix_invert | ( | double ** | _A, | |
| int | dim, | |||
| int | print_det, | |||
| int | redundant | |||
| ) |
Inverts a symmetric matrix.
| **_A | the matrix to invert | |
| dim | dimension of the matrix | |
| print_det | 1 to print determinant | |
| redundant | 1 if redundant coordinates |
| double psi::to_MB | ( | size_t | n | ) |
Convert the size of a doubles array in Mb using the definition 1Mb = 1048576 bytes
| n | size of the array |
| EXT bool psi::check_only |
sanity check boolean
| bool psi::g_bVerbose |
Verbosity
Global task object
| EXT std::string psi::g_szInputFile |
The name of the input file, could be useful for something
| EXT std::string psi::g_szOutputFilename |
Name of the output file
| ModuleInformation psi::modules_[] |
Initial value:
{
{ "input", &input::input, &input::register_input_options },
{ "", NULL, NULL}
}
| int psi::myid |
This is called immediately before a module is run. Any options expected by that module must be added here
| name | - the name of the module. | |
| options | - the liboptions module used in the computations. |
| psio_address psi::PSIO_ZERO = { 0, 0 } |
A convenient address initialization struct
| const std::string psi::Z_to_element[] |
Initial value:
{
"GHOST", "HYDROGEN", "HELIUM",
"LITHIUM", "BERYLLIUM", "BORON", "CARBON", "NITROGEN", "OXYGEN", "FLUORINE", "NEON",
"SODIUM", "MAGNESIUM", "ALUMINUM", "SILICON", "PHOSPHORUS", "SULFUR", "CHLORINE", "ARGON",
"POTASSIUM", "CALCIUM", "SCANDIUM", "TITANIUM", "VANADIUM", "CHROMIUM", "MANGANESE",
"IRON", "COBALT", "NICKEL", "COPPER", "ZINC", "GALLIUM", "GERMANIUM", "ARSENIC", "SELENIUM",
"BROMINE", "KRYPTON",
"RUBIDIUM", "STRONTIUM", "YTTRIUM", "ZIRCONIUM", "NIOBIUM", "MOLYBDENUM", "TECHNETIUM",
"RUTHENIUM", "RHODIUM", "PALLADIUM", "SILVER", "CADMIUM", "INDIUM", "TIN", "ANTIMONY",
"TELLURIUM", "IODINE", "XENON",
"CESIUM", "BARIUM", "LANTHANUM", "CERIUM", "PRASEODYMIUM", "NEODYMIUM", "PROMETHIUM",
"SAMARIUM", "EUROPIUM", "GADOLINIUM", "TERBIUM", "DYSPROSIUM", "HOLMIUM", "ERBIUM",
"THULIUM", "YTTERBIUM", "LUTETIUM", "HAFNIUM", "TANTALUM", "TUNGSTEN", "RHENIUM",
"OSMIUM", "IRIDIUM", "PLATINUM", "GOLD", "MERCURY", "THALLIUM", "LEAD", "BISMUTH",
"POLONIUM", "ASTATINE", "RADON",
"FRANCIUM", "RADIUM", "ACTINIUM", "THORIUM", "PROTACTINIUM", "URANIUM", "NEPTUNIUM",
"PLUTONIUM", "AMERICIUM", "CURIUM", "BERKELIUM", "CALIFORNIUM", "EINSTEINIUM", "FERMIUM",
"MENDELEVIUM", "NOBELIUM", "LAWRENCIUM", "UNQ", "UNP", "UNH", "UNS",
}
1.5.6